Fine Mapping, Candidate Gene Identification and Co-segregating Marker Development for the Phytophthora Root Rot Resistance Gene RpsYD25.
Identifieur interne : 000208 ( Main/Exploration ); précédent : 000207; suivant : 000209Fine Mapping, Candidate Gene Identification and Co-segregating Marker Development for the Phytophthora Root Rot Resistance Gene RpsYD25.
Auteurs : Chao Zhong [République populaire de Chine] ; Suli Sun [République populaire de Chine] ; Xuecui Zhang [République populaire de Chine] ; Canxing Duan [République populaire de Chine] ; Zhendong Zhu [République populaire de Chine]Source :
- Frontiers in genetics [ 1664-8021 ] ; 2020.
Abstract
Phytophthora root rot (PRR) caused by Phytophthora sojae is a serious disease of soybean. The most effective disease-control strategy is to deploy resistant cultivars carrying Rps genes. Soybean cultivar Yudou25 can effectively resist pathotypes of P. sojae in China. Previous studies have mapped the Rps gene in Yudou25, RpsYD25, on chromosome 3. In this study, at first RpsYD25 was located between SSR markers Satt1k3 (2.2 cM) and BARCSOYSSR_03_0253 (4.5 cM) by using an F2:3 population containing 165 families derived from Zaoshu18 and Yudou25. Then the recombination sites were identified in 1127 F3:4 families derived from Zaoshu18 and Yudou25 using the developed PCR-based SNP, InDel and SSR markers, and RpsYD25 was finely mapped in the a 101.3 kb genomic region. In this region, a zinc ion binding and nucleic acid binding gene Glyma.03g034700 and two NBS-LRR genes Glyma.03g034800 and Glyma.03g034900 were predicted as candidate genes of RpsYD25, and five co-segregated SSR markers with RpsYD25 were identified and validated to be diagnostic markers. Combined with the resistance reaction to multiple P. sojae isolates, seven of 178 soybean genotypes were detected to contain RpsYD25 using the five co-segregated SSR markers. The soybean genotypes carrying RpsYD25 and the developed co-segregated markers can be effectively applied in the breeding for P. sojae resistance in China.
DOI: 10.3389/fgene.2020.00799
PubMed: 32849803
PubMed Central: PMC7399351
Affiliations:
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Development for the Phytophthora Root Rot Resistance Gene <i>RpsYD25</i>.</title><author><name sortKey="Zhong, Chao" sort="Zhong, Chao" uniqKey="Zhong C" first="Chao" last="Zhong">Chao Zhong</name><affiliation wicri:level="3"><nlm:affiliation>Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation><affiliation wicri:level="1"><nlm:affiliation>College of Agronomy, Shenyang Agricultural University, Shenyang, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Agronomy, Shenyang Agricultural University, Shenyang</wicri:regionArea><wicri:noRegion>Shenyang</wicri:noRegion></affiliation></author><author><name sortKey="Sun, Suli" sort="Sun, Suli" uniqKey="Sun S" first="Suli" last="Sun">Suli Sun</name><affiliation wicri:level="3"><nlm:affiliation>Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Zhang, Xuecui" sort="Zhang, Xuecui" uniqKey="Zhang X" first="Xuecui" last="Zhang">Xuecui Zhang</name><affiliation wicri:level="3"><nlm:affiliation>Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Duan, Canxing" sort="Duan, Canxing" uniqKey="Duan C" first="Canxing" last="Duan">Canxing Duan</name><affiliation wicri:level="3"><nlm:affiliation>Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Zhu, Zhendong" sort="Zhu, Zhendong" uniqKey="Zhu Z" first="Zhendong" last="Zhu">Zhendong Zhu</name><affiliation wicri:level="3"><nlm:affiliation>Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author></analytic><series><title level="j">Frontiers in genetics</title><idno type="ISSN">1664-8021</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Phytophthora root rot (PRR) caused by <i>Phytophthora sojae</i> is a serious disease of soybean. The most effective disease-control strategy is to deploy resistant cultivars carrying <i>Rps</i> genes. Soybean cultivar Yudou25 can effectively resist pathotypes of <i>P. sojae</i> in China. Previous studies have mapped the <i>Rps</i> gene in Yudou25, <i>RpsYD25</i>, on chromosome 3. In this study, at first <i>RpsYD25</i> was located between SSR markers Satt1k3 (2.2 cM) and BARCSOYSSR_03_0253 (4.5 cM) by using an F<sub>2:3</sub> population containing 165 families derived from Zaoshu18 and Yudou25. Then the recombination sites were identified in 1127 F<sub>3:4</sub> families derived from Zaoshu18 and Yudou25 using the developed PCR-based SNP, InDel and SSR markers, and <i>RpsYD25</i> was finely mapped in the a 101.3 kb genomic region. In this region, a zinc ion binding and nucleic acid binding gene Glyma.03g034700 and two NBS-LRR genes Glyma.03g034800 and Glyma.03g034900 were predicted as candidate genes of <i>RpsYD25</i>, and five co-segregated SSR markers with <i>RpsYD25</i> were identified and validated to be diagnostic markers. Combined with the resistance reaction to multiple <i>P. sojae</i> isolates, seven of 178 soybean genotypes were detected to contain <i>RpsYD25</i> using the five co-segregated SSR markers. The soybean genotypes carrying <i>RpsYD25</i> and the developed co-segregated markers can be effectively applied in the breeding for <i>P. sojae</i> resistance in China.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">32849803</PMID><DateRevised><Year>2020</Year><Month>09</Month><Day>28</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Print">1664-8021</ISSN><JournalIssue CitedMedium="Print"><Volume>11</Volume><PubDate><Year>2020</Year></PubDate></JournalIssue><Title>Frontiers in genetics</Title><ISOAbbreviation>Front Genet</ISOAbbreviation></Journal><ArticleTitle>Fine Mapping, Candidate Gene Identification and Co-segregating Marker Development for the Phytophthora Root Rot Resistance Gene <i>RpsYD25</i>.</ArticleTitle><Pagination><MedlinePgn>799</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.3389/fgene.2020.00799</ELocationID><Abstract><AbstractText>Phytophthora root rot (PRR) caused by <i>Phytophthora sojae</i> is a serious disease of soybean. The most effective disease-control strategy is to deploy resistant cultivars carrying <i>Rps</i> genes. Soybean cultivar Yudou25 can effectively resist pathotypes of <i>P. sojae</i> in China. Previous studies have mapped the <i>Rps</i> gene in Yudou25, <i>RpsYD25</i>, on chromosome 3. In this study, at first <i>RpsYD25</i> was located between SSR markers Satt1k3 (2.2 cM) and BARCSOYSSR_03_0253 (4.5 cM) by using an F<sub>2:3</sub> population containing 165 families derived from Zaoshu18 and Yudou25. Then the recombination sites were identified in 1127 F<sub>3:4</sub> families derived from Zaoshu18 and Yudou25 using the developed PCR-based SNP, InDel and SSR markers, and <i>RpsYD25</i> was finely mapped in the a 101.3 kb genomic region. In this region, a zinc ion binding and nucleic acid binding gene Glyma.03g034700 and two NBS-LRR genes Glyma.03g034800 and Glyma.03g034900 were predicted as candidate genes of <i>RpsYD25</i>, and five co-segregated SSR markers with <i>RpsYD25</i> were identified and validated to be diagnostic markers. Combined with the resistance reaction to multiple <i>P. sojae</i> isolates, seven of 178 soybean genotypes were detected to contain <i>RpsYD25</i> using the five co-segregated SSR markers. The soybean genotypes carrying <i>RpsYD25</i> and the developed co-segregated markers can be effectively applied in the breeding for <i>P. sojae</i> resistance in China.</AbstractText><CopyrightInformation>Copyright © 2020 Zhong, Sun, Zhang, Duan and Zhu.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Zhong</LastName><ForeName>Chao</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>College of Agronomy, Shenyang Agricultural University, Shenyang, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sun</LastName><ForeName>Suli</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Xuecui</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Duan</LastName><ForeName>Canxing</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhu</LastName><ForeName>Zhendong</ForeName><Initials>Z</Initials><AffiliationInfo><Affiliation>Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>07</Month><Day>28</Day></ArticleDate></Article><MedlineJournalInfo><Country>Switzerland</Country><MedlineTA>Front Genet</MedlineTA><NlmUniqueID>101560621</NlmUniqueID><ISSNLinking>1664-8021</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Phytophthora root rot</Keyword><Keyword MajorTopicYN="N">RpsYD25</Keyword><Keyword MajorTopicYN="N">fine mapping</Keyword><Keyword MajorTopicYN="N">resistance gene</Keyword><Keyword MajorTopicYN="N">soybean</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2020</Year><Month>02</Month><Day>09</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2020</Year><Month>07</Month><Day>03</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2020</Year><Month>8</Month><Day>28</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate 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